First objective of the JISC-supported Sonex initiative was to identify and analyse deposit opportunities (use cases) for ingest of research papers (and potentially other scholarly work) into repositories. Later on, the project scope widened to include identification and dissemination of various projects being developed at institutions in relation to the deposit usecases previously analyzed. Finally, Sonex was recently asked to extend its analysis of deposit opportunities to research data.






Showing posts with label BioMed Central. Show all posts
Showing posts with label BioMed Central. Show all posts

Friday, 13 April 2012

Democratizing research data management


"A bit of competition would certainly do no harm to institutionally-driven RDM projects"
(JISC MRD Project representative along a conversation on LabArchives)

  A press release was published last week by BioMed Central announcing its partnership with LabArchives in order to provide access to an enhanced version of this Electronic Lab Notebook to all BMC journal authors. This enhanced version of LabArchives with a default 100 MB storage will allow researchers to assign DOIs to every dataset submitted as supplementary material to any BMC title. Labarchives is howewer not specifically aimed for supplementary data management: on the one hand the platform has a publisher-oriented side for supplementary dataset submission; on the other hand however, LabArchives could also be used as a standard tool for general-purpose research data management. This feature offers researchers the opportunity to use a RDM tool regardless of their institutional affiliation, scientific discipline or country they are working in.


Since the press release was published on Apr 4th, ie just before the Easter holidays arrived, there hasn't been much of a discussion (yet) on its potential implications to research data management. Howewer, this commercial software may provide an additional means to do RDM to all research groups in the UK currently not covered by a JISC MRD project or a specific institutional data policy. Besides this, in those countries where no particular emphasis is being made on the need for RDM initiatives, this tool might mean a very useful way to promote RDM directly among researchers removing the need for institutional data policies, funder mandates on data deposit and even support from data librarians. If we consider the double bottleneck currently preventing RDM activities to succeed in many countries -a top-down one created by the lack of official committement to RDM and a bottom-up one at understaffed institutional repository management teams- this BMC-LabArchives partnership could mean something close to a revolution in research data management if properly disseminated to authors, research groups and institutions.

There are of course other RDM platforms around as of today, such as figshare, Dryad or the growing data repository network, but LabArchives offering researchers the opportunity to publish the data they decide to share (including DOI assignment), a new way has in fact been opened for performing RDM at big and small HEIs. 100 MB -or even the 100 GB storage offered by the LabArchives susbcription-based professional version- may not seem much storage for certain disciplines but it will certainly serve the needs of many other ones and LabArchives may also be installed locally for those centres with larger storage requirements.

While some institutional approaches to RDM infrastructure creation include the development of in-house built RDM platforms, many others couldn't possibly afford the cost of such a task. In this sense, LabArchives means the opportunity to democratize the management of research data. The main requirement for LabArchives to succeed as a fully functional alternative RDM tool is now to ensure its interoperability with other well-known data management platforms such as Dryad or the institutional data repository network. Once it achieves that, it may become a formidable competitor to the JANET-brokered UMF cloud-based infrastructure for data management - and indeed a very useful complement to it.

Saturday, 11 December 2010

Hrynaszkiewicz & Cockerill "In defence of supplemental data files"

A valuable text on Open Research Data was published last Fri Dec 10th by Iain Hrynaszkiewicz and Matt Cockerill at the BioMed Central blog. International initiatives for data sharing such as DataCite are mentioned in the article, along with plenty of other interesting references.

Another article on Open Data by Iain Hrynaszkiewicz was recently released in BMC Research Notes: "A call for BMC Research Notes contributions promoting best practice in data standardization, sharing and publication".

Wednesday, 6 October 2010

BMC Automated Article Deposit feature


As of Sep 29th, BioMed Central Update announced BMC Shared Support Membership as a new kind of low-cost membership for sharing article processing fees between institutions and their research teams. Main issue from a Sonex point of view in this new type of BMC membership is it includes a feature for Automated Article Deposit into repositories via Sword, by which "any article published [in BMC open access journals] will be automatically deposited into the Shared Support Member's institutional repository". This means extension to further institutions for the http://sonexworkgroup.blogspot.com/2010/04/biomed-central-partners-with-mit.html announced last Apr 29th.



See BMC Automated Article Deposit for further information on this deposit service and BMC customers entitle to it, and BMC Member list by country to check for potential institutional users.

Thursday, 29 April 2010

BioMed Central partners with MIT Libraries to deposit open access articles using SWORD

BioMed Central, the leading open access publisher, has worked with the Massachusetts Institute of Technology (MIT) Libraries to develop an automated system that uses the latest technology to automatically populate MIT's digital repository, DSpace@MIT, with the official version of articles by MIT researchers that have been published in BioMed Central's journals.

In order to make it easier for MIT authors to submit articles to DSpace@MIT, the MIT Libraries worked with BioMed Central to set up an automatic feed of MIT articles, using a version of the Simple Web-service Offering Repository Deposit (SWORD) protocol. The SWORD protocol allows the institutional repository to receive newly published articles from any of BioMed Central's 200+ journals as soon as they are published, without the need for any effort on the part of the author and streamlining the deposit process for the repository administrator.

In describing the importance of the SWORD integration, Matthew Cockerill, BioMed Central's Managing Director said, "Campus open access policies are hugely important, but the effort involved in compliance can be a major obstacle to their success. That is why we think that automated deposit has an important role to play. We hope that this pioneering work by BioMed Central in collaboration with MIT Libraries will encourage other institutions to work with us to establish similar automated feeds, and we encourage other publishers to adopt a similar approach".

Read more at BMC Press release.